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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70618498_70619908_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70618498 - 70619908
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
AACCTGTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAACC
Flanking Amino Acid:
PHNEVIDYNTSFSGVTEDNL
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
61.9
0.27
0.9
58.4
37.4
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
69
0.58
1.7
77.46
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012811
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042839
70606554 - 70625545
18992
ENSAPLT00000030800
70606554 - 70625545
18992
ENSAPLT00000013332
70606554 - 70625545
18992