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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70636998_70638243_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70636998 - 70638243
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGGGTTTC
5'SS Class:
major
3'SS Sequence:
AACTCTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
ATCTGCTTAACT
Flanking Amino Acid:
RMAQAFQNVVREEPAVQFNS
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
71
35.7
Major BPS
71.6
0.54
1
72
33.1
Major PPT
72.3
0.5
1
64.7
40.5
Minor 5ss
38.1
-1.3
3.2
48.3
42.5
Minor BPS
72.8
0.79
1.8
86.17
40

Associated Gene:

Gene:
TEK
Ensembl Gene ID:
ENSAPLG00000012815
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013433
70630855 - 70671380
40526