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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70638402_70638814_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70638402 - 70638814
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GCTTCCTCAACA
Flanking Amino Acid:
FELKTLPETKAPYESKGGKM
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.2
27
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
71.5
0.48
0.9
66
34.6
Minor 5ss
38.2
-1.3
2.8
50
46.3
Minor BPS
71.8
0.68
1.5
76.68
40.2

Associated Gene:

Gene:
TEK
Ensembl Gene ID:
ENSAPLG00000012815
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013433
70630855 - 70671380
40526