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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70639115_70640156_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70639115 - 70640156
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TGTCTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGCTCTCCAACA
Flanking Amino Acid:
NYLYAWTFSDRIPPAPYNIK
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
77.2
0.61
0.9
68.7
42
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
50.2
0
1.9
65.1
41.2

Associated Gene:

Gene:
TEK
Ensembl Gene ID:
ENSAPLG00000012815
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013433
70630855 - 70671380
40526