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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70641266_70642103_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70641266 - 70642103
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCATCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTCAACTTTACT
Flanking Amino Acid:
KRYQSWMSVEVKGTTKRLDN
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
79.8
0.67
0.8
77.6
29.5
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
57.8
0.33
1.9
78.23
43.5

Associated Gene:

Gene:
TEK
Ensembl Gene ID:
ENSAPLG00000012815
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013433
70630855 - 70671380
40526