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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70643846_70645560_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70643846 - 70645560
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
ATATATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATGACATTAAAA
Flanking Amino Acid:
GWHGLQCEKEGSADLSPQIE
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
77
0.61
0.9
70.6
40
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
54.7
0.14
1.8
65.6
40

Associated Gene:

Gene:
TEK
Ensembl Gene ID:
ENSAPLG00000012815
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013433
70630855 - 70671380
40526