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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70645690_70646404_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70645690 - 70646404
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTCA
5'SS Class:
major
3'SS Sequence:
TATGTACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTATACTAACT
Flanking Amino Acid:
TGWMGLECDKECKPGFYGSD
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.3
36
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
77.8
0.63
0.9
70.7
39.8
Minor 5ss
42.5
-0.8
3.1
56.5
47.9
Minor BPS
56.6
0.28
2
82.73
37.8

Associated Gene:

Gene:
TEK
Ensembl Gene ID:
ENSAPLG00000012815
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013433
70630855 - 70671380
40526