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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70646546_70647531_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70646546 - 70647531
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTCTCTTCAATA
Flanking Amino Acid:
PGFMGKTCEKACGANTFGKT
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
76.3
0.59
0.8
73.8
29.8
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
67.7
0.55
1.5
75.09
37.1

Associated Gene:

Gene:
TEK
Ensembl Gene ID:
ENSAPLG00000012815
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013433
70630855 - 70671380
40526