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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70653341_70658868_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70653341 - 70658868
Intron Length:
5528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGCAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCTAAACT
Flanking Amino Acid:
RIHTMKMPLGASFHPVALTV
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
62.6
43.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.4
0.8
0.7
84.5
30.4
Minor 5ss
31.4
-2.1
3.6
47.4
48
Minor BPS
78.8
0.98
1.6
93.01
35.4

Associated Gene:

Gene:
TEK
Ensembl Gene ID:
ENSAPLG00000012815
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013433
70630855 - 70671380
40526