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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70681740_70684040_R

Intron Information:

Intron Rank:
15
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
70681740 - 70684040
Intron Length:
2301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTCTTTTAATCAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTCCTTAATT
Flanking Amino Acid:
HEQNNFMMKEFIATKSQESD
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
64.4
42.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.6
0.69
0.9
82.1
33.3
Minor 5ss
98.3
1.62
0.6
94.6
16.9
Minor BPS
90
1.33
0.8
96.98
27.6

Associated Gene:

Gene:
IFT74
Ensembl Gene ID:
ENSAPLG00000013715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040474
70681624 - 70721289
39666
ENSAPLT00000014364
70680249 - 70721289
41041
ENSAPLT00000043938
70681624 - 70721289
39666