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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70686123_70686852_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70686123 - 70686852
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAAAT
Flanking Amino Acid:
LKASGEEKKKRLQDDKEKLT
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73
0.52
0.9
70.8
33.8
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
59.8
0.39
1.6
76.7
40.1

Associated Gene:

Gene:
IFT74
Ensembl Gene ID:
ENSAPLG00000013715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043938
70681624 - 70721289
39666