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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70687017_70690668_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70687017 - 70690668
Intron Length:
3652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGACCA
5'SS Class:
major
3'SS Sequence:
TTTGTTGGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TATTTAGTGATT
Flanking Amino Acid:
SQSTAKNLITESQKLQMDLQ
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
61.5
39
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
68
0.41
1
61.7
44.5
Minor 5ss
25.7
-2.8
3
31.3
42.3
Minor BPS
47.4
-0.1
2.2
72.23
39

Associated Gene:

Gene:
IFT74
Ensembl Gene ID:
ENSAPLG00000013715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014364
70680249 - 70721289
41041
ENSAPLT00000043938
70681624 - 70721289
39666
ENSAPLT00000040474
70681624 - 70721289
39666