About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70690796_70691805_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70690796 - 70691805
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATACTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTTGTTATTT
Flanking Amino Acid:
IIALLEHSSRNVNCMKQISS
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.4
0.48
1
65.8
39.6
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
49.9
0.07
2.3
74.56
43.3

Associated Gene:

Gene:
IFT74
Ensembl Gene ID:
ENSAPLG00000013715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043938
70681624 - 70721289
39666
ENSAPLT00000040474
70681624 - 70721289
39666
ENSAPLT00000014364
70680249 - 70721289
41041