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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70705463_70718134_R

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
70705463 - 70718134
Intron Length:
12672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTCTCCTTC
5'SS Class:
minor
3'SS Sequence:
TGTGTTCTTAAAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGTTCTTAAAG
Flanking Amino Acid:
CYQLLILNTPFKHELVKIAQ
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
44.1
-0.3
1.4
42.4
39.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.5
0.48
1.1
71.2
38.9
Minor 5ss
78
0.94
1.7
82.3
30.5
Minor BPS
65.3
0.34
1.5
65.07
42.5

Associated Gene:

Gene:
IFT74
Ensembl Gene ID:
ENSAPLG00000013715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040474
70681624 - 70721289
39666