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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70713239_70713420_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70713239 - 70713420
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCTCATTCACA
Flanking Amino Acid:
ICLTASNVTMENENNTTCTF
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.9
0.56
0.9
68.4
36.4
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
55
0.15
2.1
69.26
42.8

Associated Gene:

Gene:
LRRC19
Ensembl Gene ID:
ENSAPLG00000016953
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037292
70709665 - 70715219
5555
ENSAPLT00000023330
70711199 - 70715219
4021