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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70718509_70720017_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70718509 - 70720017
Intron Length:
1509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
MDKTYYLGLLRSKTNELTTE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
IFT74
Ensembl Gene ID:
ENSAPLG00000013715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014364
70680249 - 70721289
41041