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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70726929_70727839_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70726929 - 70727839
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GATTTCTTAAAA
Flanking Amino Acid:
LPGKEHLKEPGTRDGQTRLI
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
82
0.72
0.8
76.5
32.1
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
71.3
0.66
1.3
74.68
36

Associated Gene:

Gene:
PLAA
Ensembl Gene ID:
ENSAPLG00000014215
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030125
70721494 - 70738845
17352
ENSAPLT00000014854
70721494 - 70738845
17352