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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70731309_70732419_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70731309 - 70732419
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGGTGTTTAAAA
Flanking Amino Acid:
STVPGADPFTGAGRYVPGSA
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
73.1
0.52
0.8
69.7
29.9
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
54.2
0.13
1.9
65.01
41.5

Associated Gene:

Gene:
PLAA
Ensembl Gene ID:
ENSAPLG00000014215
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014854
70721494 - 70738845
17352