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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70732492_70733158_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70732492 - 70733158
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTATGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTCCTTTATG
Flanking Amino Acid:
APMGGVDPYTGTGAYQSAAA
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80
0.68
0.8
77.2
30.4
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
69.7
0.48
1.7
73.77
38.5

Associated Gene:

Gene:
PLAA
Ensembl Gene ID:
ENSAPLG00000014215
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030125
70721494 - 70738845
17352
ENSAPLT00000014854
70721494 - 70738845
17352