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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70742583_70744101_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70742583 - 70744101
Intron Length:
1519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TCTGTCTTATCT
Flanking Amino Acid:
LQKMLPDILKNCSMDEIKRL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
78.2
0.63
0.8
77
31.7
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
63
0.49
1.7
78.81
43.9

Associated Gene:

Gene:
CAAP1
Ensembl Gene ID:
ENSAPLG00000014602
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015215
70741105 - 70756473
15369