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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7098929_7101954_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7098929 - 7101954

Intron Length:

3026

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCACTGAAG

5'SS Class:

weak_major

3'SS Sequence:

TCTCCTTCCACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAT

U12 Branch Point Sequence:

TTGTCCTGATCT

Flanking Amino Acid:

LLSRVYEVVTVTGD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.7

0.21

1.3

50.5

46.1

Major BPS

78.8

0.71

67.6

40.6

Major PPT

80.8

0.69

0.7

75.6

26.5

Minor 5ss

19.8

-3.5

3.8

21.5

37.6

Minor BPS

0.61

1.8

85.02

41.3

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362