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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71019379_71021098_F

Intron Information:

Intron Rank:
146090
Intron Class:
major
Intron Phase:
Intron Coordinates:
71019379 - 71021098
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TATTTTGCATAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTGAATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
83
0.82
0.8
82
24.9
Major PPT
64.1
0.32
1.2
69.7
40.4
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
57
0.2
1.9
72.53
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028708
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045001
71019290 - 71038625
19336