Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71021158_71027155_F

Intron Information:

Intron Rank:

146087

Intron Class:

major

Intron Phase:

Intron Coordinates:

71021158 - 71027155

Intron Length:

5998

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTCTTTTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.8

79.3

28.9

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

86.6

0.82

0.8

84.3

29.1

Minor 5ss

30.7

-2.2

2.6

33.5

35.6

Minor BPS

79.4

0.92

82.25

33.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028708

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023575

71021099 - 71039833

18735