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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71054862_71060242_R

Intron Information:

Intron Rank:
149813
Intron Class:
major
Intron Phase:
Intron Coordinates:
71054862 - 71060242
Intron Length:
5381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAACTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCCACAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
70.5
39.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
82.2
0.72
0.9
82.8
32.6
Minor 5ss
43.3
-0.7
3.3
65.1
46.1
Minor BPS
59.2
0.27
1.9
77.61
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028171
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041460
71052093 - 71061072
8980