Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7111288_7112094_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7111288 - 7112094

Intron Length:

807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCGCA

5'SS Class:

major

3'SS Sequence:

GCTGTTCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATCAA

U12 Branch Point Sequence:

AGGCCCTCACAC

Flanking Amino Acid:

TNNVGQIKKIRIEHDNTGLN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.2

40.2

Major BPS

70.2

0.5

72.1

Major PPT

75.7

0.58

0.9

65.9

40.9

Minor 5ss

42.2

-0.9

3.2

56.9

47.3

Minor BPS

43.6

-0.5

1.8

49.02

40.3

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362