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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7112280_7125804_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7112280 - 7125804

Intron Length:

13525

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TATTAATGAGTT

Flanking Amino Acid:

GSLNPMDVPKINKYVVRVFT

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

81.6

29.9

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

86.2

0.81

0.7

80.7

24.5

Minor 5ss

-1.5

3.3

50.9

39.6

Minor BPS

45.8

-0.2

68.95

41.3

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362