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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71141218_71146526_F

Intron Information:

Intron Rank:
134676
Intron Class:
major
Intron Phase:
Intron Coordinates:
71141218 - 71146526
Intron Length:
5309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
CTTTCTTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
74.2
36.1
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
84.9
0.79
0.8
76.7
37
Minor 5ss
29.2
-2.4
3.1
40
45.5
Minor BPS
52.9
0.17
2
75.4
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022420
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038666
71140477 - 71147549
7073