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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7125904_7127633_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7125904 - 7127633

Intron Length:

1730

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTCAAA

5'SS Class:

major

3'SS Sequence:

TTATATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTTTTATATTT

Flanking Amino Acid:

INIFGEKGDTGVRKLDNDKD

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.54

1.1

68.7

37.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.83

0.8

Minor 5ss

44.9

-0.6

2.6

57.3

Minor BPS

51.2

0.12

1.8

74.4

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362