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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7127777_7130295_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7127777 - 7130295

Intron Length:

2519

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTT|GCAAAGGTT

5'SS Class:

weak_major

3'SS Sequence:

TCTTTTCTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

TATTTTGCAAAG

Flanking Amino Acid:

NKGGSAGWFLVIIEDIGNKC

Intron Amino Acid Position:

213

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.5

0.11

1.4

70.6

36.4

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

84.9

0.78

0.6

84.8

22.8

Minor 5ss

26.8

-2.7

4.6

51.6

46.6

Minor BPS

43.5

-0.6

2.2

53.4

41.6

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362