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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7137009_7140364_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7137009 - 7140364

Intron Length:

3356

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

TGGTTTAATGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTTGGTTTAATG

Flanking Amino Acid:

NPFAGWHLNKVTLLKTLTKE

Intron Amino Acid Position:

466

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.8

71.2

34.5

Major BPS

81.8

0.79

1.1

34.5

Major PPT

0.25

1.2

61.8

42.8

Minor 5ss

24.3

-3

3.1

29.7

43.1

Minor BPS

57.3

0.09

1.9

66.31

42.6

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362