Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7142632_7145576_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7142632 - 7145576

Intron Length:

2945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTTCA

5'SS Class:

major

3'SS Sequence:

CTCCTCCTCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTTAC

U12 Branch Point Sequence:

ACTGCTTTACCT

Flanking Amino Acid:

NNVNKFEKGNADEFFVEAVT

Intron Amino Acid Position:

565

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

1.3

77.7

33.5

Major BPS

56.2

0.16

1.3

51.3

43.9

Major PPT

66.1

0.36

66.2

27.3

Minor 5ss

41.9

-0.9

2.7

49.9

39.7

Minor BPS

58.6

0.35

1.7

73.4

44.1

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362