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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7152751_7153568_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7152751 - 7153568
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GATCTCACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TTTTTTGTACAT
Flanking Amino Acid:
VPAGESPMLKNVSYHISVKT
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
76.2
0.65
1
67
39.8
Major PPT
72.1
0.5
0.9
67.4
38.7
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
47.9
-0
2.3
75.95
41.3

Associated Gene:

Gene:
LOXHD1
Ensembl Gene ID:
ENSAPLG00000010718
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026296
7098916 - 7229277
130362
ENSAPLT00000011160
7098916 - 7229277
130362