Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7161444_7162685_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7161444 - 7162685

Intron Length:

1242

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTATGTT

5'SS Class:

major

3'SS Sequence:

TTTTATCTGACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

ACACTCTTAAAT

Flanking Amino Acid:

SLATLGLEQKAKSTTYTVKV

Intron Amino Acid Position:

1073

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.38

1.3

71.2

38.9

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

80.2

0.68

76.8

37.1

Minor 5ss

39.5

-1.2

3.3

58.3

46.3

Minor BPS

60.7

0.41

1.4

69.9

40.5

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362