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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71619801_71625677_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71619801 - 71625677
Intron Length:
5877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTTCTGATTT
Flanking Amino Acid:
KNITSGQYLSKFLANTTFDG
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
67.8
0.4
0.8
62
27.3
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
51.2
0.12
1.7
68.88
42.5

Associated Gene:

Gene:
GRIN3A
Ensembl Gene ID:
ENSAPLG00000008012
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008306
71588433 - 71660394
71962