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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71626726_71642973_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71626726 - 71642973
Intron Length:
16248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAATCTGTAATT
Flanking Amino Acid:
EELSGIHDPKLHHPSQGFRF
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75
0.56
0.8
73.7
31.2
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
59.9
0.39
2
77.68
39.1

Associated Gene:

Gene:
GRIN3A
Ensembl Gene ID:
ENSAPLG00000008012
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008306
71588433 - 71660394
71962