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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7162791_7163491_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7162791 - 7163491

Intron Length:

701

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTCTC

5'SS Class:

strong_major

3'SS Sequence:

ATCACCACAACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TTTTGCATCACC

Flanking Amino Acid:

ITLYGSKDDTGIVSLKASKI

Intron Amino Acid Position:

1108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

77.9

36.9

Major BPS

0.62

1.4

85.7

34.9

Major PPT

59.5

0.21

52.4

Minor 5ss

44.9

-0.6

2.8

61.5

43.4

Minor BPS

49.9

-0

2.4

75.32

41.4

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362