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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7164410_7167875_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7164410 - 7167875

Intron Length:

3466

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGCAGA

5'SS Class:

major

3'SS Sequence:

ATTTCTAAACCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

AATTTCTAAACC

Flanking Amino Acid:

AELQTTEYIPFVPYEITVYT

Intron Amino Acid Position:

1206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

67.9

0.4

61.3

43.1

Minor 5ss

35.7

-1.6

44.2

43.7

Minor BPS

66.2

0.49

1.6

73.55

37.1

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026296

7098916 - 7229277

130362

ENSAPLT00000011160

7098916 - 7229277

130362