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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71647118_71656281_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71647118 - 71656281
Intron Length:
9164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCTTCATTAACT
Flanking Amino Acid:
CGKRSFAVTETLQMGIKHFS
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.7
0.74
0.8
77.2
35.5
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
73.5
0.81
1.6
84.99
41.5

Associated Gene:

Gene:
GRIN3A
Ensembl Gene ID:
ENSAPLG00000008012
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008306
71588433 - 71660394
71962