About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71656447_71657688_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71656447 - 71657688
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
CTTTTAGTAATT
Flanking Amino Acid:
KMKYWLHTSQRLHRALNSSF
Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
81.9
0.72
0.7
74.4
30.8
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
50.1
0.08
2.2
76.06
41.3

Associated Gene:

Gene:
GRIN3A
Ensembl Gene ID:
ENSAPLG00000008012
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008306
71588433 - 71660394
71962