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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71668263_71668492_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71668263 - 71668492
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CTCTCTATAATG
Flanking Amino Acid:
ILMEEIKDYKARLTCPCCNM
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
72.4
39.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
82.1
0.72
0.8
76.2
32.4
Minor 5ss
29.6
-2.3
2.8
36.8
40.3
Minor BPS
55.1
0.02
1.7
59.42
43.3

Associated Gene:

Gene:
RNF20
Ensembl Gene ID:
ENSAPLG00000007347
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007731
71665286 - 71687824
22539