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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71670318_71671436_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71670318 - 71671436
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTGG
5'SS Class:
major
3'SS Sequence:
CTCTCTTCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CCTTTTGTATCT
Flanking Amino Acid:
ADQVLTLKTQVDAQLQVVRK
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
46.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
70
0.45
1
74.7
27.7
Minor 5ss
48.8
-0.1
2.6
65
46.2
Minor BPS
46.5
-0.1
2.2
66.05
45.6

Associated Gene:

Gene:
RNF20
Ensembl Gene ID:
ENSAPLG00000007347
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007731
71665286 - 71687824
22539