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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71677652_71678618_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71677652 - 71678618
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGATTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTCTCTGATTT
Flanking Amino Acid:
EQTLAANEQAGPINREMRHL
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.8
35.2
Major BPS
79
0.72
1
69
38.9
Major PPT
73.7
0.53
0.9
68.3
37.2
Minor 5ss
38.6
-1.3
3.1
50.7
46.2
Minor BPS
50.5
0.1
1.7
70.88
40.1

Associated Gene:

Gene:
RNF20
Ensembl Gene ID:
ENSAPLG00000007347
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007731
71665286 - 71687824
22539