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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71682369_71682669_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71682369 - 71682669
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCA
5'SS Class:
major
3'SS Sequence:
TTATCCCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATCCCCAACA
Flanking Amino Acid:
GGTITINARKFEEMNAELEE
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.5
36.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.3
0.5
0.9
67.2
33.8
Minor 5ss
44.2
-0.6
2.8
57.5
46.7
Minor BPS
62.4
0.39
1.9
77.97
38.1

Associated Gene:

Gene:
RNF20
Ensembl Gene ID:
ENSAPLG00000007347
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007731
71665286 - 71687824
22539