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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71683085_71684039_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71683085 - 71684039
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
CTTTTGATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACTCTTTTGATT
Flanking Amino Acid:
QEKHRIMSQEFSKLQERVET
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.2
0.75
0.9
77.5
35.5
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
58.7
0.36
1.2
69.42
35.9

Associated Gene:

Gene:
RNF20
Ensembl Gene ID:
ENSAPLG00000007347
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007731
71665286 - 71687824
22539