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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71684159_71685320_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71684159 - 71685320
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACCC
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTCTGTTCATT
Flanking Amino Acid:
DVLSHKLNSGDITLMEEAVL
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
65.2
39.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
69.6
0.44
0.9
66
35.9
Minor 5ss
39.3
-1.2
3
51.9
44.8
Minor BPS
48.3
-0
2.4
76.4
40.9

Associated Gene:

Gene:
RNF20
Ensembl Gene ID:
ENSAPLG00000007347
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007731
71665286 - 71687824
22539