Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71685504_71685659_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71685504 - 71685659

Intron Length:

156

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

GTTTTTGCATCT

Flanking Amino Acid:

NQERKDERERGEGLEPAFSF

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.1

37.5

Major BPS

0.62

1.4

85.7

34.9

Major PPT

79.6

0.67

0.8

37.3

Minor 5ss

25.6

-2.8

3.1

31.9

42.9

Minor BPS

43.9

-0.3

2.3

68.03

43.2

Associated Gene:

Gene:

RNF20

Ensembl Gene ID:

ENSAPLG00000007347

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007731

71665286 - 71687824

22539