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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71686082_71686256_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71686082 - 71686256
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
CACTTCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TTTTGTGGAATG
Flanking Amino Acid:
TIKLGGVSSTEEMDIRTLQT
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.8
41.3
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
69.3
0.44
0.9
63.9
36.5
Minor 5ss
46.7
-0.3
2.8
68.2
42.5
Minor BPS
44.3
-0.5
2.4
59.4
43.3

Associated Gene:

Gene:
RNF20
Ensembl Gene ID:
ENSAPLG00000007347
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007731
71665286 - 71687824
22539