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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71725807_71725956_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71725807 - 71725956
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCACATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTCTTTCACA
Flanking Amino Acid:
AGTNGETTIEGLDGLSERCA
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.6
0.6
0.9
70.8
34
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
70
0.62
1.7
79.83
36.4

Associated Gene:

Gene:
ALDOB
Ensembl Gene ID:
ENSAPLG00000007042
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007338
71724684 - 71728243
3560