About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_71727436_71727913_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71727436 - 71727913
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGGC
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CTAATCTGATCT
Flanking Amino Acid:
AQEAFRKRAQINSLACRGQY
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
64.4
40.6
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
29.7
-2.3
3.5
41.9
44.9
Minor BPS
48.5
-0
1.8
66.13
44.1

Associated Gene:

Gene:
ALDOB
Ensembl Gene ID:
ENSAPLG00000007042
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007338
71724684 - 71728243
3560