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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7175712_7178284_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7175712 - 7178284

Intron Length:

2573

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATACTA

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTATTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAC

U12 Branch Point Sequence:

ACATCTCCACTT

Flanking Amino Acid:

IEEEVEDPLEVHTYKISVFT

Intron Amino Acid Position:

1360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

73.6

Major BPS

0.5

0.9

61.4

35.9

Major PPT

82.9

0.74

0.8

77.2

29.8

Minor 5ss

35.6

-1.6

3.2

48.3

47.2

Minor BPS

41.8

-0.5

1.9

55.76

40.9

Associated Gene:

Gene:

LOXHD1

Ensembl Gene ID:

ENSAPLG00000010718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011160

7098916 - 7229277

130362

ENSAPLT00000026296

7098916 - 7229277

130362